High frequency oscillations (HFOs) are estimated as a potential marker for epileptogenicity. Current research strives for valid evidence that these HFOs could aid the delineation of the to-be resected area in patients with refractory epilepsy and improve surgical outcomes. In the present meta-analysis, we evaluated the relation between resection of regions from which HFOs can be detected and outcome after epilepsy surgery. We conducted a systematic review of all studies that related the resection of HFO-generating areas to postsurgical outcome. We related the outcome (seizure freedom) to resection ratio, that is, the ratio between the number of channels on which HFOs were detected and, among these, the number of channels that were inside the resected area. We compared the resection ratio between seizure free and not seizure free patients. In total, 11 studies were included. In 10 studies, ripples (80–200 Hz) were analyzed, and in 7 studies, fast ripples (>200 Hz) were studied. We found comparable differences (dif) and largely overlapping confidence intervals (CI) in resection ratios between outcome groups for ripples (dif = 0.18; CI: 0.10–0.27) and fast ripples (dif = 0.17; CI: 0.01–0.33). Subgroup analysis showed that automated detection (dif = 0.22; CI: 0.03–0.41) was comparable to visual detection (dif = 0.17; CI: 0.08–0.27). Considering frequency of HFOs (dif = 0.24; CI: 0.09–0.38) was related more strongly to outcome than considering each electrode that was showing HFOs (dif = 0.15; CI = 0.03–0.27). The effect sizes found in the meta-analysis are small but significant. Automated detection and application of a detection threshold in order to detect channels with a frequent occurrence of HFOs is important to yield a marker that could be useful in presurgical evaluation. In order to compare studies with different methodological approaches, detailed and standardized reporting is warranted.
BackgroundCOPD is a progressive disease of the airways that is characterized by neutrophilic inflammation, a condition known to promote the excessive formation of neutrophil extracellular traps (NETs). The presence of large amounts of NETs has recently been demonstrated for a variety of inflammatory lung diseases including cystic fibrosis, asthma and exacerbated COPD.ObjectiveWe test whether excessive NET generation is restricted to exacerbation of COPD or whether it also occurs during stable periods of the disease, and whether NET presence and amount correlates with the severity of airflow limitation.Patients, materials and methodsSputum samples from four study groups were examined: COPD patients during acute exacerbation, patients with stable disease, and smoking and non-smoking controls without airflow limitation. Sputum induction followed the ECLIPSE protocol. Confocal laser microscopy (CLSM) and electron microscopy were used to analyse samples. Immunolabelling and fluorescent DNA staining were applied to trace NETs and related marker proteins. CLSM specimens served for quantitative evaluation.ResultsSputum of COPD patients is clearly characterised by NETs and NET-forming neutrophils. The presence of large amounts of NET is associated with disease severity (p < 0.001): over 90 % in exacerbated COPD, 45 % in stable COPD, and 25 % in smoking controls, but less than 5 % in non-smokers. Quantification of NET-covered areas in sputum preparations confirms these results.ConclusionsNET formation is not confined to exacerbation but also present in stable COPD and correlates with the severity of airflow limitation. We infer that NETs are a major contributor to chronic inflammatory and lung tissue damage in COPD.
Summary n‐dimensional hypervolumes are commonly applied in ecology and evolutionary studies to describe and compare niches, trait spaces characterizing phenotypes or the functional composition of communities. Classical ecological surveys, modern analytical tools and the establishment of online data bases will produce large multivariate data sets, which demands robust statistical tools to analyse and interpret hypervolumes. Existing approaches often have weaknesses; for example, they rely on multivariate normally or elliptically distributed data, perform poorly in higher dimensions, or their outputs vary arbitrarily with parameter choice. Here we introduce dynamic range boxes as a robust nonparametric approach to quantify size and overlap of n‐dimensional hypervolumes. Dynamic range boxes (implemented in the r package dynRB) improve the concept of multivariate range boxes by accounting for the distribution of the data within their range, while still no assumptions on the underlying distributions are needed. In addition to calculating the whole n‐dimensional hypervolume, the package dynRB also provides functions for a coordinate‐wise analysis and interpretation of the data. The concept of dynamic range boxes reliably computes sizes and overlaps of n‐dimensional hypervolumes, which makes dynamic range boxes readily applicable for a broad range of data sets to answer questions related to various disciplines.
We introduce the R package npmv that performs nonparametric inference for the comparison of multivariate data samples and provides the results in easy-to-understand, but statistically correct, language. Unlike in classical multivariate analysis of variance, multivariate normality is not required for the data. In fact, the different response variables may even be measured on different scales (binary, ordinal, quantitative). p values are calculated for overall tests (permutation tests and F approximations), and, using multiple testing algorithms which control the familywise error rate, significant subsets of response variables and factor levels are identified. The package may be used for low-or highdimensional data with small or with large sample sizes and many or few factor levels.
a b s t r a c tWe develop parametric and nonparametric bootstrap methods for multi-factor multivariate data, without assuming normality, and allowing for covariance matrices that are heterogeneous between groups. The newly proposed, general procedure includes several situations as special cases, such as the multivariate Behrens-Fisher problem, the multivariate one-way layout, as well as crossed and hierarchically nested two-way layouts. We derive the asymptotic distribution of the bootstrap tests for general factorial designs and evaluate their performance in an extensive comparative simulation study. For moderate sample sizes, the bootstrap approach provides an improvement to existing methods in particular for situations with nonnormal data and heterogeneous covariance matrices in unbalanced designs. For balanced designs, less computationally intensive alternatives based on approximate sampling distributions of multivariate tests can be recommended.
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