Fish conservation in South America is a pressing issue. The biodiversity of fishes, just as with all other groups of plants and animals, is far from fully known. Continuing habitat loss may result in biodiversity losses before full species diversity is known. In this review, the main river basins of South America (Magdalena, Orinoco, Amazon and Paraná-La Plata system), together with key aquatic habitats (mangrove-fringed estuaries of the tropical humid, tropical semi-arid and subtropical regions) are analysed in terms of their characteristics and main concerns. Habitat loss was the main concern identified for all South American ecosystems. It may be caused by damming of rivers, deforestation, water pollution, mining, poor agricultural practice or inadequate management practice. Habitat loss has a direct consequence, which is a decrease in the availability of living resources, a serious social and economic issue, especially for South American nations which are all developing countries. The introduction of exotic species and overfishing were also identified as widespread across the continent and its main freshwater, coastal and marine ecosystems. Finally, suggestions are made to find ways to overcome these problems. The main suggestion is a change of paradigm and a new design for conservation actions, starting with integrated research and aiming at the co-ordinated and harmonized management of the main transboundary waters of the continent. The actions would be focused on habitat conservation and social rescue of the less well-off populations of indigenous and non-indigenous peoples. Energy and freshwater demands will also have to be rescaled in order to control habitat loss.

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For more than a century, two major zoogeographic provinces have been proposed for the southwestern Atlantic: a warm water Argentinean Province from Rio de Janeiro (23°S, Brazil) to Valdés Peninsula (42°S, Argentina), and a cold water Magellanic Province from Valdés Peninsula to Cape Horn. This zoogeographic scheme has been recognized so far using data covering only parts of the whole geographic area. Here, we test the validity of this scheme by analyzing the distribution of sharks, skates, rays and chimaeras, using data from research cruises covering the entire area. We used cluster, similarity and dissimilarity analyses to identify species assemblages, and canonical correspondence analysis to identify the main environmental variables affecting the composition of the assemblages. The distribution of chondrichthyan assemblages strongly supports the current zoogeographic scheme and identifies a previously unknown and distinctive deep water zoogeographic unit off southern Brazil. Both, the Argentinean and Magellanic Provinces had extensive internal structure, with four and three subareas identified in each of them, respectively. These subareas correspond, with slight differences, to previously proposed zoogeographical districts within the Argentinean Province and confirm ecological differences within the Magellanic Province. Species composition had the highest correlation with depth and bottom water temperature. Since the distribution of anthropogenic disturbances in the region is uneven, different assemblages can be subjected to different impacts. Our results provide an objective basis to establish priority areas for the conservation of chondrichthyans in the southwestern Atlantic.