Even though the Indo-Malay Archipelago hosts the world's greatest diversity of marine species, studies on the genetic population structure and gene flow of marine organisms within this area are rather rare. Consequently, not much is known about connectivity of marine populations in the Indo-Malay Archipelago, despite the fact that such information is important to understand evolutionary and ecological processes in the centre of marine biodiversity. This study aims to investigate the genetic population structure of the boring giant clam, Tridacna crocea. The analysis is based on a 456-bp fragment of the cytochrome oxidase I gene from 300 individuals collected from 15 localities across the Indo-Malay Archipelago. Tridacna crocea shows a very strong genetic population structure and isolation by distance, indicating restricted gene flow between almost all sample sites. The observed Phi(ST)-value of 0.28 is very high compared to other studies on giant clams. According to the pronounced genetic differences, the sample sites can be divided into four groups from West to East: (i) Eastern Indian Ocean, (ii) Java Sea, (iii) South China Sea, Indonesian throughflow, as well as seas in the East of Sulawesi, and (iv) Western Pacific. This complex genetic population structure and pattern of connectivity, characterised by restricted gene flow between some sites and panmixing between others can be attributed to the geological history and prevailing current regimes in the Indo-Malay Archipelago.

The tropical Indo-West Pacific is the biogeographic region with the highest diversity of marine shallow water species, with its centre in the Indo-Malay Archipelago. However, due to its high endemism, the Red Sea is also considered as an important centre of evolution. Currently, not much is known about exchange among the Red Sea, Indian Ocean and West Pacific, as well as connectivity within the Indo-Malay Archipelago, even though such information is important to illuminate ecological and evolutionary processes that shape marine biodiversity in these regions. In addition, the inference of connectivity among populations is important for conservation. This study aims to test the hypothesis that the Indo-Malay Archipelago and the Red Sea are important centres of evolution by studying the genetic population structure of the giant clam Tridacna maxima. This study is based on a 484-bp fragment of the cytochrome c oxidase I gene from 211 individuals collected at 14 localities in the Indo-West Pacific to infer lineage diversification and gene flow as a measure for connectivity. The analysis showed a significant genetic differentiation among sample sites in the Indo-West Pacific (U st = 0.74, P \ 0.001) and across the Indo-Malay Archipelago (U st = 0.72, P \ 0.001), indicating restricted gene flow. Hierarchical AMOVA revealed the highest fixation index (U ct = 0.8, P \ 0.001) when sample sites were assigned to the following regions: (1) Red Sea, (2) Indian Ocean and Java Sea, (3) Indonesian throughflow and seas in the East of Sulawesi, and (4) Western Pacific. Geological history as well as oceanography are important factors that shape the genetic structure of T. maxima in the Indo-Malay Archipelago and Red Sea. The observed deep evolutionary lineages might include cryptic species and this result supports the notion that the Indo-Malay Archipelago and the Red Sea are important centres of evolution.

Comparative analyses of the genetic population structure of hosts and parasites can be useful to elucidate factors that influence dispersal, because common ecological and evolutionary processes can lead to congruent patterns. We studied the comparative genetic population structure based on partial sequences of the mitochondrial cytochrome oxidase I gene of the blue starfish Linckia laevigata and its gastropod ectoparasite Thyca crystallina in order to elucidate evolutionary processes in the Indo-Malay Archipelago. AMOVA revealed a low fixation index but significant genetic population structure (φ ST = 0.03) in L. laevigata, whereas T. crystallina showed panmixing (φ ST = 0.005). According to a hierarchical AMOVA, the populations of L. laevigata could be assigned to the following groups: (1) Eastern Indian Ocean, (2) central Indo-Malay Archipelago and (3) Western Pacific. This pattern of a genetic break in L. laevigata between the Indian and Pacific Ocean, congruent to studies on other marine species in the Indo-Malay Archipelago, is likely due to allopatry caused by Pliocene and Pleistocene glacial sea level low stands.

Information on the genetic population structure of endangered giant clams is important for conservation programmes and the understanding of ecological and evolutionary processes. In this study, the genetic population structures of three codistributed and ecologically similar giant clam species (Tridacna crocea, T. maxima and T. squamosa) are compared. A fragment of the cytochrome c oxidase I gene was sequenced as a genetic marker in three giant clam species sampled throughout the Indo-West Pacific, from the Western Indian Ocean (WIO) and Red Sea (RS) to the Eastern Indian Ocean (EIO), across the centre of marine biodiversity in the Indo-Malay Archipelago (IMA) to the Western Pacific (WP) and the Society Islands in the Central Pacific (CP). All three species showed limited gene flow and a highly significant genetic population structure. The F st-values (P , 0.001) are 0.46, 0.81 and 0.68 for T. crocea, T. maxima and T. squamosa, respectively. Based on a hierarchical AMOVA they could be divided into three to six groups from West to East: (1) WIO (T. maxima and T. squamosa), (2) RS (T. maxima and T. squamosa), (3) EIO (including Java Sea in T. maxima), (4) central IMA, (5) WP and (6) CP (T. maxima). The distribution of the haplotype clades in the populations and the pairwise F st-values between populations indicated a high level of gene flow in the central IMA for the three species. The concordant patterns suggest that geological history, sea-level changes during glacial periods of the Pliocene and Pleistocene, and oceanography are important factors shaping the genetic population structure of giant clams. The observed deep evolutionary lineages in the peripheral areas of the IMA might include cryptic species.

Zonal and meridional winds in the equatorial mesosphere and lower thermosphere (65-98 km) measured at two sites separated by 94• in longitude are used to study the zonal structure of planetary-scale waves. The data were obtained with MF radars located at Pontianak (0 • N, 109• E)and Christmas Island (2 • N, 157• W). The data at Christmas Island were collected from January 1990 to December 1997 and the observations at Pontianak were made from November 1995 to July 1997. Power spectral techniques are used to study the amplitude and frequency variations of long-period oscillations as a function of height and time. A mean climatology of these variations taken from years 1990-1997 is presented. Strong peaks in zonal and meridional winds are found at tidal periods and for the quasi 2-day wave. Zonal spectra exhibit considerable power at periods of 3-10 days, with transient oscillations with periods near 3.5 day and 6.5 days being especially prominent. The 6.5-day wave is particularly strong during April and September. Examination of the phase differences obtained from cross-spectra between the two stations show that the 6.5-day wave is westward propagating with zonal wavenumber 1, while the 3.5 day wave is eastward propagating with wavenumber 1. The 6.5-day wave is identified as a manifestation of an unstable mode, while the 3.5-day wave is identified as an ultrafast Kelvin wave. There are significant longitudinal variations in the amplitudes and inferred momentum fluxes of the 3.5-day wave, amplitudes being larger in the Asian region than in the central Pacific.

[1] We studied the behavior of intraseasonal oscillations (ISO) of the zonal wind velocity in the equatorial mesosphere and lower thermosphere (MLT) using simultaneous observations during 500 days from 1 January 1996 with a meteor radar at Jakarta (6°S, 107°E) and two medium-frequency radars at Pontianak (0°N, 109°E) and Christmas Island (2°N, 157°W). Cross-correlation analysis of the ISO at 88 km indicated that the phase difference of the ISO between Pontianak and Christmas Island is, on average, small in spite of the longitudinal difference of $90°. Therefore the ISO in the equatorial MLT region seems to be a variation of zonal mean flow. At Jakarta the amplitude of the ISO of the zonal wind at 88 km was somewhat smaller than that observed at the other two equatorial sites. The peak of the ISO amplitude appears at $88 km at both Pontianak and Christmas Island, but the peak seemed to be slightly lower at Jakarta. We also investigated long-term variation of the ISO of the zonal wind at 84 km using Jakarta meteor radar data observed from January 1993 to October 1999. Biennial variations are dominant in the ISO amplitude of the mesospheric zonal winds and the zonal amplitude variations of the diurnal tide. A relation between the ISO of the zonal wind and tidal amplitude is suggested. However, gravity wave activity in the MLT region did not correlate with the ISO in the zonal wind. We employed the outgoing longwave radiation (OLR) in the tropical troposphere as an index for excitation intensity of the atmospheric waves. The long-term variations of the ISO components in the OLR over the western Pacific were characterized by the tropospheric biennial oscillations, which seems to correlate with the ISO of the mean zonal winds and diurnal tides in the mesosphere. INDEX TERMS: 3332

The long-term behavior of atmospheric tides in the mesosphere and lower thermosphere has been observed with the meteor wind radar (MWR) in Jakarta, Indonesia (6• S, 107• E) from November 1992 to August 1997. The amplitudes and phases of the diurnal tides show systematic seasonal variations, particularly distinct in the meridional component. In addition, substantial interannual variability is evident, characterized by a biennial periodicity of tidal parameters, and considerably small tidal amplitudes exclusively seen in 1996. The MWR results are compared with the Global Scale Wave Model (GSWM) as well as MF radar data collected in two equatorial sites in Pontianak (0.03• N, 109• E) and Christmas Island (2 • N, 158• W) for November 1995-July 1997 and January 1996-October 1997, respectively. Comparison studies of these radar data have revealed the detailed latitudinal structure of the diurnal tide near the equator. The GSWM has successfully described the general characteristics of the radar results, although some discrepancies are recognized. In 1996 when radar data are available at all the three sites, the monthly mean values of tidal amplitudes at 90 km agreed very well between Jakarta and Pontianak, while significant discrepancy was found for Christmas Island, suggesting the existence of geographical effects such as non-migrating tides.

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